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IPM - Institute for Research in Fundamental Sciences

Bioinformatics Research Group @ IPM

         
Full-PSSM
 		Position - Specific  Scoring Matrix Software
     
 Full-PSSM is a stand alone software for calculating position-specific scoring matrix(PSSM) for a given protein sequence.this software has a userfriendly interface, that user can easily calculate PSSM for many fasta files at once.also this version support uniref 50 ,uniref 90 and uniref 100 databases.
A position specific scoring matrix (PSSM) is a matrix based on the amino acid frequencies at every position of a multiple alignment.From these frequencies, the PSSM that will be calculated will result in a matrix that will assign superior scores to residues that appear more often than by chance at a certain position.


Full PSSM Software , Released 2009

Documents  A user guide manual is being prepared .you can download from here




Download
  you can download this software from here


 

Requirements
  Before you'll be able to use Full PSSM software , you need to install DOTNET Framework 3.5





Contact to   Alireza Meshkin:meshkin@nigeb.ac.ir
                                                                                                                               

  Bioinformatics Research Group

School of Computer Sciences Sciences s Sciences

Institute for Studies in Theoretical Physics and Mathematics (IPM)
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